PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_2328_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 31318.4 Da PI: 8.6703 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.7 | 1.8e-43 | 6 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrF Pt+eelv++yL++k+eg++ l ++++i+ v+iy+++PwdLp+ ++ + ++w+fF++r+k++ +g r+nr t++gyWkatg+ Neem_2328_f_1 6 PPGFRFYPTEEELVSFYLHNKLEGRRqdlnLLMDRIIPVVNIYDYNPWDLPQfseyLCHRDPEQWFFFVPRQKNEVRGGRPNRLTTAGYWKATGSP 101 9************************96655444568**************9646653344667********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s +++++g k+t+vfy+grap+g+ktdW m+ey+ Neem_2328_f_1 102 GFVYS-SNRVIGEKRTMVFYRGRAPSGTKTDWKMNEYK 138 *****.9999***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-48 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.422 | 5 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-22 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MVEEYPPGFR FYPTEEELVS FYLHNKLEGR RQDLNLLMDR IIPVVNIYDY NPWDLPQFSE 60 YLCHRDPEQW FFFVPRQKNE VRGGRPNRLT TAGYWKATGS PGFVYSSNRV IGEKRTMVFY 120 RGRAPSGTKT DWKMNEYKAI EKRANTSTAA TIPLARPEFS LCRLYKKSKC LRAFDRRPPP 180 GVITGEPWAQ RVTHHGDDHI RQKGVDHHQT LQMAVAERIS SPESLSSEDG HGGQPPQIGE 240 RSNMVMNCNN EAWREWEEYL DLFCGLRKG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-36 | 6 | 167 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-36 | 6 | 167 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-36 | 6 | 167 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-36 | 6 | 167 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-36 | 6 | 167 | 21 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-36 | 6 | 167 | 18 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-36 | 6 | 167 | 18 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481732.1 | 1e-112 | NAC domain-containing protein 90-like | ||||
TrEMBL | A0A2H5MYF9 | 1e-111 | A0A2H5MYF9_CITUN; Uncharacterized protein | ||||
STRING | XP_006481732.1 | 1e-111 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-71 | NAC domain containing protein 90 |