PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22787_a_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9472.71 Da PI: 5.1443 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.6e-10 | 8 | 56 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++W+ eE + + ++v+++ ++ W +I + ++ ++t ++k++++k+ Neem_22787_a_3 8 NPWSWEENKAFENGVAMYYKNggedEWVKIRSLVP-TKTIDEIKLHFRKL 56 79****************9999*************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.9E-6 | 6 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-8 | 8 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 8 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-10 | 8 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-7 | 9 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MSGSSGTNPW SWEENKAFEN GVAMYYKNGG EDEWVKIRSL VPTKTIDEIK LHFRKLVEDL 60 QLIESGIIPD SLPYEDKKQK QK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021292289.1 | 6e-15 | transcription factor MYBS1 | ||||
TrEMBL | A0A067DXJ8 | 3e-29 | A0A067DXJ8_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2H5PQ56 | 3e-29 | A0A2H5PQ56_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VBS6 | 3e-29 | V4VBS6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006436529.1 | 5e-30 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25770 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 2e-14 | MYB family protein |