PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22759_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 276aa MW: 31163.2 Da PI: 4.1885

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22759_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.1	3.2e-11	14	43	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd++l+d+++++G g+W+t ++ Neem_22759_f_4 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKN 43 79************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-14	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.31E-9	9	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.883	9	54	IPR017930	Myb domain
Pfam	PF00249	7.6E-9	14	42	IPR001005	SANT/Myb domain
CDD	cd00167	5.66E-7	16	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNADLSSIL SSSLYNSSQM 60 NISRLLGVQP LVNPELLRLA TSLMSSQHEN QSPNQNQNQN FLLQNVQENQ LCNPQSQYQQ 120 LVQPENTPQL QIPACTTLTT PCVPFSNDQA QLMNPNVEQF PTNFTNFSDQ NSQPNEWQSN 180 GMPSNFTEDY VPVPPNYNYY GSDQTVMDPS SETSNLHANN SHQNFNFASV LSTPSSSPTP 240 LNSNSTYMST EDERESYCSN MLKFEIPDIL DVNEFM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449197.1	1e-105	transcription factor MYB102
Refseq	XP_006467911.1	1e-105	transcription factor MYB102
TrEMBL	A0A067G807	1e-104	A0A067G807_CITSI; Uncharacterized protein
TrEMBL	V4U8Y8	1e-104	V4U8Y8_9ROSI; Uncharacterized protein
STRING	XP_006467911.1	1e-104	(Citrus sinensis)
STRING	XP_006449197.1	1e-104	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	8e-25	MYB-like 102