PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22701_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 69aa MW: 8106.74 Da PI: 7.8531

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22701_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	0.0001	50	67	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h+e E+rRR++iN++ Neem_22701_f_2 50 RSKHSETEQRRRSKINER 67 899*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.4E-4	46	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MVKSSKNHLE EDEEADVYDE LIHRNSSSSY KGEEMKSEGK SSERKANTHR SKHSETEQRR 60 RSKINERQA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430966.1	1e-26	transcription factor BIM3
Refseq	XP_024038515.1	1e-26	transcription factor BIM3
TrEMBL	V4SYT0	2e-25	V4SYT0_9ROSI; Uncharacterized protein
STRING	XP_006430966.1	5e-26	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	2e-07	BES1-interacting Myc-like protein 3