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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22021_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 26387.1 Da PI: 4.3174 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.6e-09 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+ +++q+G+g +W + ++++g Neem_22021_f_1 14 KGPWSPEEDAKLKAYIEQHGTGgNWIALPQKIG 46 79***********************99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.26E-7 | 8 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.097 | 9 | 52 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.5E-7 | 14 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-4 | 16 | 40 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QHGTGGNWIA LPQKIGVMNQ SPYWPELSVV 60 APPVIPQQLD YHFKDDESFR SLLIKLGGTF SDDHQPSITT TSSSVQYPFD VSFSQDHSYD 120 NTMSMLASPA SMTNSNGSQL PNTQFIAGPT MSQSLENFPV ELSDQLAYSN QQQLDELERF 180 YGLNVVNGST GTTSAESTSW EDMSSFVYPT IPSNYETCQQ SILQHSTFEE PRYFGHQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097403 | 9e-41 | BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022739718.1 | 9e-48 | transcription factor RAX3-like | ||||
TrEMBL | A0A067GTR9 | 7e-46 | A0A067GTR9_CITSI; Uncharacterized protein | ||||
STRING | XP_006466578.1 | 1e-46 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17577 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 9e-27 | myb domain protein 84 |