PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21965_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 284aa    MW: 33472.2 Da    PI: 5.7532
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21965_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.22.1e-131503886
        trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                    m ++g+++sp+qC++k+++lnkryk+++++ +++ t++++++ ++ d+++
  Neem_21965_f_1  1 MISKGCQVSPQQCEDKFNDLNKRYKRLNDILGRGvTCQVVENPALMDSMT 50
                    6689******************************99********999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.7E-9141No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MISKGCQVSP QQCEDKFNDL NKRYKRLNDI LGRGVTCQVV ENPALMDSMT QLSAKAKEDV  60
RKILSSKHLF YKEMFAYHNG KKIPNCNDID LQGCSLPSGR CSKDNNESEE EETERNDDTE  120
EDESDNEDDR NDDRYGERMV ELGKGKRGSK EDGHFGSQST RLEGFETEMA RIFQDPSKSS  180
WERREWIEKQ KLQLQDERVN IQAQAFELEK QRLKWLRYCS KKDWELQRSR LENERIRLDN  240
ERMILHLRQK ELEVDVRRAE ASLEATFHGN RVQGRDHIDL GRHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907392.11e-135uncharacterized protein LOC112019099
TrEMBLA0A2N9HYU71e-132A0A2N9HYU7_FAGSY; Uncharacterized protein
STRINGXP_006470589.11e-131(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167391012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-58sequence-specific DNA binding transcription factors