PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_21929_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 20827.6 Da PI: 10.1648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.2e-10 | 116 | 160 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a ++ g+t +qck ++ Neem_21929_f_1 116 VWSAVQERALVQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 160 7********************************.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.667 | 112 | 167 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 8.97E-10 | 113 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-9 | 113 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-6 | 114 | 159 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-8 | 116 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.74E-8 | 117 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MQKYPKGTSR RWEVISEYIG TGRSVEEILK ATKTVLLQKP DGAKAFDSFL EKRKPAVSIT 60 SPLTTREEVE GVPIHQVPQK SGVKTDVSEE SSSSVNQNPP YVAAVNGVSS SSDQDVWSAV 120 QERALVQALK TFPKETSQRW ERVATAVPGK TVNQCKKKFA LLKENFRSAI SNTFGRERSL 180 DMDVPKLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594661.1 | 5e-86 | dnaJ homolog subfamily C member 2-like | ||||
TrEMBL | A0A067ENI8 | 4e-86 | A0A067ENI8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2R6R139 | 2e-87 | A0A2R6R139_ACTCH; DnaJ subfamily C member like | ||||
STRING | cassava4.1_003314m | 2e-85 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2361 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 3e-68 | DnaJ domain ;Myb-like DNA-binding domain |