PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2184_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 506aa    MW: 56713.4 Da    PI: 6.1781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2184_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08440494146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+eE++ l ++v+++ ++      W+++ +  +     +Rt+ ++k++w++
    Neem_2184_f_2 440 RLLWTAEEEDMLREGVHKFSSKvnknlPWRKVLEFGQhvfdPTRTPADLKDKWRN 494
                      677******************************9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.54E-880149IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002490.007692138IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.30.40.109.8E-692141IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS01359093137IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.5E-9435498IPR009057Homeodomain-like
PROSITE profilePS512949.629435500IPR017930Myb domain
SuperFamilySSF466892.62E-9438496IPR009057Homeodomain-like
SMARTSM007173.5E-5439498IPR001005SANT/Myb domain
PfamPF002494.9E-7442495IPR001005SANT/Myb domain
CDDcd116601.37E-8443496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MKTKTRGGRA RLPKFHSPSS TTPSFPLLNR DEANGEHSKG SIAPETSSKK DDDCEVVASA  60
YFGAETDIRV EKPGGLGLSE DCVDMDWLEG GTCLKCDRGG GNLLPCSQSG CPVALHENCT  120
NGRPKFDDEG NFYCPYCWYK HEVMKTQELR KKAMKAKKAL AHFLDFGRVG DDKEKENGGT  180
DERKEINDRM DNDQVENQFM EMDQDQNDDR NNAKLAGPFD QFKLIPENQR DPSTRLSGLS  240
ENINICNGHE KNPGVESLVD SPSKEMLIEE KISKTHELET LADGETIQAE ASGQVADSGQ  300
VKVVEEQLQK EPFNACCVEG ENSVDVSLNI SKKHMTDPVD LKQGRIEEEE KMDPGKLGTE  360
MSDSDMETIS MHKRRLRQSS KKLQSKNVDS PKKLSSPSSA TLKKIDGPRN EKISGSKKST  420
QQVSAEKFTS FSFANEKRKR LLWTAEEEDM LREGVHKFSS KVNKNLPWRK VLEFGQHVFD  480
PTRTPADLKD KWRNITAKES SGVNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038553.11e-127uncharacterized protein LOC112097440
TrEMBLA0A2H5P7101e-127A0A2H5P710_CITUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1539557