PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_21804_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 320aa MW: 35928.1 Da PI: 4.545 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.7e-19 | 85 | 139 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+ Neem_21804_f_1 85 KKRRLTATQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSKN 139 56689***********************************************995 PP | |||||||
2 | HD-ZIP_I/II | 121.9 | 3.2e-39 | 85 | 174 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR k+++lEkdy++Lk+ayd+lk++ ++L ke+e L++e+ Neem_21804_f_1 85 KKRRLTATQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSKNQRLEKDYDSLKAAYDKLKTDYDNLLKEKEVLHDEV 174 9*************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-19 | 77 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-18 | 82 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.96E-17 | 83 | 141 | No hit | No description |
Pfam | PF00046 | 2.7E-16 | 85 | 138 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 87 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.9E-6 | 111 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.9E-6 | 120 | 136 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-12 | 141 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MAGGNICGSP NVAALLRNEK LPCSSNVLES FWMPKSSPTI QAPKPVVNFA NVGGGDTTST 60 QLFESLDKQQ NGFEDFEGCF NPPGKKRRLT ATQVQFLEKN FEVENKLEPE RKVQLAKELG 120 LQPRQVAIWF QNRRARSKNQ RLEKDYDSLK AAYDKLKTDY DNLLKEKEVL HDEVLVLQDK 180 LLIKEKGKEK SETPDAVNSL EAEPQKPITD TDTKLVSNVP VFACKQEDAN SVKSDVLDSS 240 GSPHSTDGNH SSLIDPADSS QAFEPEQSDF SQDEEDNLGK GLLPPPYFLK LEDCCYDDPR 300 TNSCNLGFSI EDQPFWFWPY |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021293441.1 | 1e-144 | homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
TrEMBL | A0A061E6H9 | 1e-142 | A0A061E6H9_THECC; Homeobox-leucine zipper protein HAT5, putative isoform 1 | ||||
TrEMBL | A0A2N9EC56 | 1e-142 | A0A2N9EC56_FAGSY; Uncharacterized protein | ||||
STRING | EOY00208 | 1e-143 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-38 | homeobox 1 |