![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_21583_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20346.8 Da PI: 6.6291 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Neem_21583_f_1 58 YKCETCKKVFKSYQALGGHRASH 80 9************9999999888 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H rtH Neem_21583_f_1 104 HECPVCFRVFSSGQALGGHKRTH 126 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.1E-11 | 58 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.33E-7 | 58 | 126 | No hit | No description |
PROSITE profile | PS50157 | 10.034 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.2E-4 | 102 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-11 | 103 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.452 | 104 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MMLSRDKWKR KENQNELLLL QEEEEEAAAV AVATEKSMEE TDESEEFKSF KNRSRGKYKC 60 ETCKKVFKSY QALGGHRASH KKIKFYTPSH ETELEQENAD KKVHECPVCF RVFSSGQALG 120 GHKRTHVTGL VASSTSARSS TKLGENLIDL NLPAPIDDDD ISQIELSAVS DAEFVNHIKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU947712 | 2e-77 | KU947712.1 Toxicodendron vernicifluum microsatellite c24822 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445328.1 | 3e-91 | zinc finger protein ZAT9 | ||||
Refseq | XP_006490850.2 | 8e-91 | zinc finger protein ZAT9-like | ||||
Swissprot | Q9SHD0 | 8e-37 | ZAT4_ARATH; Zinc finger protein ZAT4 | ||||
TrEMBL | A0A2H5NP10 | 6e-90 | A0A2H5NP10_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TDZ7 | 7e-90 | V4TDZ7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006490850.1 | 1e-90 | (Citrus sinensis) | ||||
STRING | XP_006445328.1 | 1e-90 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1465 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-37 | C2H2-like zinc finger protein |