PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2149_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 300aa    MW: 33771.9 Da    PI: 8.6477
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2149_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.92.2e-2663157297
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                    +f+r+w+e Dei +LqGl+d  a+ g s   d++ fy+ +++ +s  +sk ql+eK+rrL+kKf+  ++++++g ++s+ + hd++ +elskk+W 
  Neem_2149_f_3  63 KFHRIWTEPDEIRFLQGLLDS-ASLGLSFPRDLHIFYDSFSNTMSQPYSKYQLSEKVRRLRKKFRVTSARISRGLNVSLLTLHDRNLYELSKKLWS 157
                    699*****************8.889*99999****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-2864157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDSSSLKPSS SLSASKLPIK RKTPGSSSSL LSPKPEEQLQ HHDQPTSAVD FNDPINIKPP  60
AFKFHRIWTE PDEIRFLQGL LDSASLGLSF PRDLHIFYDS FSNTMSQPYS KYQLSEKVRR  120
LRKKFRVTSA RISRGLNVSL LTLHDRNLYE LSKKLWSPEY LPSSPFGKSS GNSNWVGEVG  180
SFPTMQALSS NVGNDNDEGD FVNDDEGSIC GVNVDVGYDF VGQQGKRIGG VAATSVVDVF  240
DECFKEVRMV IANQGHLASG QAKEGNEKDF ERRWREQRFA EFDVLTRRLR LVLEKSFNKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430559.11e-108probable transcription factor At4g00390
TrEMBLA0A2H5NUA21e-108A0A2H5NUA2_CITUN; Uncharacterized protein
STRINGXP_006430559.11e-107(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-17DNA-binding storekeeper protein-related transcriptional regulator