PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21100_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 406aa MW: 44728.6 Da PI: 9.0013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21100_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.2e-10	345	371	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 hn ErrRRdriN+++ L+el+P++ Neem_21100_f_1 345 VHNLSERRRRDRINEKMRALQELIPHC 371 6*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-10	338	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.817	341	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-6	344	373	No hit	No description
Pfam	PF00010	1.6E-7	345	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-10	345	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MNPCMPDWNF EGDLPVSNQM KSTGTDHELV ELLWRNGQVV LQSQTHRKPT LNPTEPRQVQ 60 KQTIRGNSSS YGNSSNLIQN DETVSWIQYP IEDSLEKEFY SNFFSDLPPS GPMEVDKHAR 120 QLEGEKSVKF DVPGVVTSLQ HSNDNRSAVP GLQRSTMPPP RFEFHDAAQQ NKSLGDLGKV 180 VNFPQSTAAL KGELGSGKGQ IDRKVSGNLP QGEVRECSMM TVGSSHCGSN QVPYDIDMSR 240 ASSNGVGSTG LSPGNLKDDV RKVITQSDRG KTETLEPTVT SSSGGSGSSF NRTSKQSTGD 300 NSLKRKNRDA GESECQSEAA EFESAGGNRT AQRSGSSRRS RAAEVHNLSE RRRRDRINEK 360 MRALQELIPH CNKYSLGIGK MRMLADKNSV KSEMGCFHRK LRVAHN

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MNPCMPDWNF EGDLPVSNQM KSTGTDHELV ELLWRNGQVV LQSQTHRKPT LNPTEPRQVQ  60
KQTIRGNSSS YGNSSNLIQN DETVSWIQYP IEDSLEKEFY SNFFSDLPPS GPMEVDKHAR  120
QLEGEKSVKF DVPGVVTSLQ HSNDNRSAVP GLQRSTMPPP RFEFHDAAQQ NKSLGDLGKV  180
VNFPQSTAAL KGELGSGKGQ IDRKVSGNLP QGEVRECSMM TVGSSHCGSN QVPYDIDMSR  240
ASSNGVGSTG LSPGNLKDDV RKVITQSDRG KTETLEPTVT SSSGGSGSSF NRTSKQSTGD  300
NSLKRKNRDA GESECQSEAA EFESAGGNRT AQRSGSSRRS RAAEVHNLSE RRRRDRINEK  360
MRALQELIPH CNKYSLGIGK MRMLADKNSV KSEMGCFHRK LRVAHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	354	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437069.1	0.0	transcription factor PIF4 isoform X3
Refseq	XP_024042297.1	0.0	transcription factor PIF4 isoform X2
TrEMBL	V4VD55	0.0	V4VD55_9ROSI; Uncharacterized protein
STRING	XP_006437070.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3468	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-17	phytochrome interacting factor 3