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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_21044_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27575.8 Da PI: 9.9906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55 | 1e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g++KK +ELS+LC++e++ iifs+ Neem_21044_f_1 11 IPNDSARKATFKKRKKGLMKKVSELSTLCGIEACAIIFSP 50 889************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.829 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.95E-23 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 2.4E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTRKKVKLAY IPNDSARKAT FKKRKKGLMK KVSELSTLCG IEACAIIFSP YDAQPEIWPS 60 PVGVQRVLSQ FKKMPEMEQS KKMVNQDSFL RQRIAKANEQ LKRQKKDNRE KEITQVMFQG 120 LTAGKVLQGL NMLDLNDLGW IVDQNLKEIS KRIVMLSKVG SISSATTVQY SSSQGETTAP 180 VSASQGEKCS GFEQMGMEAM HKQQWFVDLM NSQENNMGGF GGEEVMFPFG DGGSTHSSLW 240 ANPFYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYIPNDSARKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428341.1 | 1e-120 | agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_006480389.1 | 1e-120 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 5e-68 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2H5NT82 | 1e-119 | A0A2H5NT82_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SWL0 | 1e-119 | V4SWL0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480389.1 | 1e-120 | (Citrus sinensis) | ||||
STRING | XP_006428341.1 | 1e-120 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-70 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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