PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_20801_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 136aa MW: 16204.2 Da PI: 10.8971 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.2 | 5.2e-14 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++s r+ ++ kRr g+lKK +EL +LC++++ +ii+s+++k Neem_20801_f_1 11 IVSDSARKASLKKRRVGLLKKVSELTTLCGVNAFIIIYSPEDK 53 568999*********************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.264 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-22 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.22E-24 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 7.2E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-14 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MTRKKVKLVW IVSDSARKAS LKKRRVGLLK KVSELTTLCG VNAFIIIYSP EDKEPAMWPS 60 RPVVQQLLAR FHSLPEMERC KKMMNQETYL KERVTKVQEQ LKKHHRKNKE TDVSIIMRQI 120 YHDKTLDDCN KRRRKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLVWIVSDSARKASLKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430045.1 | 7e-64 | uncharacterized protein LOC18038065 | ||||
Swissprot | Q9FJK3 | 2e-30 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | V4SW84 | 1e-62 | V4SW84_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430045.1 | 3e-63 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-31 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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