PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20250_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 267aa MW: 30428.1 Da PI: 10.5623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20250_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.4e-06	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Neem_20250_f_1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	13.2	0.00026	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Neem_20250_f_1 151 WKCEKCSKIYAVQSDWKAHSKTC 173 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.5E-6	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.13E-6	74	97	No hit	No description
SMART	SM00355	0.017	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.6E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	280	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.13E-6	146	171	No hit	No description
SMART	SM00355	170	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MFPAAMSNST SLSEEASVSS GTRVQDFGGF IPVVSTNSPQ QPQKAKKKRS LPGNPDPDAE 60 VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKD IRKRAYVCPE 120 PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRNY WSLVQSRMSR VYRRVFVFVS TCFALLLLLH KSGKTLHGIY LKLKYSGRMH 240 GKRTPLIQVS VTGDITRETG QRYVSEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-22	147	188	3	44	Zinc finger protein JACKDAW
5b3h_F	7e-22	147	188	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461724	1e-128	AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891397.1	1e-131	protein indeterminate-domain 12-like
Refseq	XP_018856472.1	1e-131	PREDICTED: protein indeterminate-domain 12-like isoform X2
Swissprot	O22759	2e-99	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2I4HK70	1e-130	A0A2I4HK70_JUGRE; protein indeterminate-domain 12-like isoform X2
STRING	EOX94636	1e-130	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-98	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]