 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Neem_20165_f_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
| Family |
Trihelix |
| Protein Properties |
Length: 280aa MW: 31109.9 Da PI: 10.3345 |
| Description |
Trihelix family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 35.2 | 3.2e-11 | 8 | 76 | 20 | 86 |
trihelix 20 rlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+l+rg+lk+++W+ev++ + +++ ++++pk qCk++++ ++k+yk +k+ ++ + s++++f++l+
Neem_20165_f_1 8 ELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKIMSG--GGASKWVFFEKLD 76
5789***************866677776654449*****************99997..66679******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
AWGERYLELS RGNLKQKHWK EVADIVSSRE DYTKTPKTDI QCKNRIDTVK KKYKLEKAKI 60
MSGGGASKWV FFEKLDQLIG PTAKIPVTAA AAAAGAAGSS RVPMGIPVGM RNQMVVATKN 120
QQQSNVFGSG GQKIQLRKRG GVAAPVETES EESGEESADS MDSFPPEKRQ RVVGNTSKGK 180
KEKDKSGWGD SVRMLTQAIL KFGEAYEQAE SAKLQQVVEM EKQRMKFAKE LELQRMQPAI 240
FPGRGCGDGI ARYKWLRQLL LLISHLCKTV YLVKAMLQDI
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 7e-52 | sequence-specific DNA binding transcription factors |
