PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20066_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 310aa    MW: 34282.9 Da    PI: 7.4621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20066_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-097198330
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                    ++h+e+ErrRR+riN  +++Lr l+P  
  Neem_20066_f_1 71 KSHSEAERRRRERINAHLDTLRGLVPCH 98
                    58************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5768137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-77198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1172140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1272139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-874143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001203261No hitNo description
CDDcd048732.09E-5206274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAAYSFNSHS SLGHGFGSLY EPLLGGFNGV FRDGSVSQSL VLDSEKGELV KAPVKVGKKE  60
VSEAKAMAAL KSHSEAERRR RERINAHLDT LRGLVPCHGK VWADAISMTY FNSRFDCYSQ  120
MDKATLLAKV ISQVKELKKN AMEASKGFLI PMDADEVKVE PYNDEAGDAN SFFKVSICCV  180
YRPELDEVKV EPYNDEAGDA NSFFKVSICC VYRPELLSDL RRALDSLPLK MIKSEISTLG  240
GRLKNVFVFT SYREGNMDNA EASKLLADAV HQALSSVLER GSPSPEYSPR TTLPNKRQRT  300
SFFESSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449491.11e-119transcription factor bHLH30
RefseqXP_006467661.11e-119transcription factor bHLH30
TrEMBLA0A067GQY41e-118A0A067GQY4_CITSI; Uncharacterized protein
TrEMBLA0A2H5N3B21e-118A0A2H5N3B2_CITUN; Uncharacterized protein
TrEMBLV4UKA31e-118V4UKA3_9ROSI; Uncharacterized protein
STRINGXP_006467661.11e-118(Citrus sinensis)
STRINGXP_006449491.11e-118(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-22bHLH family protein