PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19953_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 288aa    MW: 32335.5 Da    PI: 5.5772
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19953_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
   Neem_19953_f_1 21 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 68
                     788*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9731672IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-231871IPR009057Homeodomain-like
SMARTSM007171.9E-122070IPR001005SANT/Myb domain
PfamPF002492.0E-152168IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-212396IPR009057Homeodomain-like
CDDcd001675.58E-122468No hitNo description
PROSITE profilePS500904.21769103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-87295IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEKERFGKQP AKFGIGGKVK RGLWSPEEDE KLIRYITTHG YGCWSEVPEK AGLQRCGKSC  60
RLRWINYLRP DIRRGRFTPE EEKLIISLHS VVGNRLLYKI MARSNLAVKL VANAAIRHLG  120
GDLGNQDLTT RPPVQETLFS SPCPLFMFDP TPLDGITDHH NVRADQLFHE SASLNNETWN  180
ANQHQVQAVL PPSTSFTTGM ETHYLPPLIE NMENMVPMDH VQSCSMDEEG EIALDCLQRQ  240
ELNEWVESQH SSFLFSWENV EGQLGGGEEI APASSNTGAT LSSFPSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-13211177105B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150346e-43AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476502.11e-136transcription factor MYB10
TrEMBLV4THA61e-135V4THA6_9ROSI; Uncharacterized protein
STRINGXP_006439482.11e-136(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87602539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-59myb domain protein 103