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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1981_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 20797 Da PI: 5.6815 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Neem_1981_f_1 34 YECTFCKRGFTNAQALGGHMNIH 56 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 29 | 60 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.13E-7 | 30 | 60 | No hit | No description |
PROSITE profile | PS50157 | 11.468 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MESPGKQRSS DSSSEENDRL EQVKEDAATT KRSYECTFCK RGFTNAQALG GHMNIHRKDR 60 AKAKQTISSS FSNKSIAMNE DSMNPRYIAP VSSEPTKYYP AFEARRDYLM YCPPSASSPR 120 HPHAYNDIEF FPRSQSLSMN EELLGANLSL GISPTYEEDN EVRKGIMEEE ELDLELRLGH 180 TTR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007035036.1 | 9e-82 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A061ENL3 | 2e-80 | A0A061ENL3_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative | ||||
STRING | EOY05962 | 4e-81 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9168 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-15 | C2H2 family protein |