PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1962_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 393aa MW: 44352.4 Da PI: 6.3829

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1962_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.4e-14	195	246	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ +++Lr+l+P++ + ++ + a+i A++++k+L+ Neem_1962_f_7 195 QRMTHIAVERNRRRQMNDHLNTLRSLMPSS---YVQRGDQASIIGGAIDFVKELE 246 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.17E-13	193	250	No hit	No description
SuperFamily	SSF47459	4.19E-17	194	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.605	194	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-14	195	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-11	195	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-11	200	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MEKLQGPINP CFLGEHLSAD CLGQEFINTD ALRFEEEGPQ FTTQNLEERM PFLEMLQTVE 60 TPSLFPFKEP NFQTLLRLQH LKKPWEMANL YMPEMETQIQ ALELESCVTQ EILDLHSPVK 120 SETKDLQNPH STSCLEGLSS ESNQDQLNSV EKITHPQTRA RAKQTHFSKS PAINRERRKR 180 KRTKPIKNKE EVENQRMTHI AVERNRRRQM NDHLNTLRSL MPSSYVQRGD QASIIGGAID 240 FVKELEQLLQ SLEAQKRMRM GTTAVEGSES ATSTTTADKA ILSNGLLMSK PEIGNFEEKV 300 KAESKTDGAE IEVIVIQSHI NLKIQCPRRP GQLLKAIVAL EDLGLTFLHL NITSSQTTVH 360 YSFNLKIADD CKLGSADEIA AAVHQMFSSI SGS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MEKLQGPINP CFLGEHLSAD CLGQEFINTD ALRFEEEGPQ FTTQNLEERM PFLEMLQTVE  60
TPSLFPFKEP NFQTLLRLQH LKKPWEMANL YMPEMETQIQ ALELESCVTQ EILDLHSPVK  120
SETKDLQNPH STSCLEGLSS ESNQDQLNSV EKITHPQTRA RAKQTHFSKS PAINRERRKR  180
KRTKPIKNKE EVENQRMTHI AVERNRRRQM NDHLNTLRSL MPSSYVQRGD QASIIGGAID  240
FVKELEQLLQ SLEAQKRMRM GTTAVEGSES ATSTTTADKA ILSNGLLMSK PEIGNFEEKV  300
KAESKTDGAE IEVIVIQSHI NLKIQCPRRP GQLLKAIVAL EDLGLTFLHL NITSSQTTVH  360
YSFNLKIADD CKLGSADEIA AAVHQMFSSI SGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	RRKRKR
2	177	184	RKRKRTKP
3	195	206	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444719.1	0.0	transcription factor bHLH57
Refseq	XP_006491385.1	0.0	transcription factor bHLH57 isoform X2
Swissprot	O81037	1e-85	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A067HFG5	0.0	A0A067HFG5_CITSI; Uncharacterized protein
TrEMBL	V4VX60	0.0	V4VX60_9ROSI; Uncharacterized protein
STRING	XP_006491385.1	0.0	(Citrus sinensis)
STRING	XP_006444719.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]