PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19599_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 272aa    MW: 30336.8 Da    PI: 10.5764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19599_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.3e-1393138247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT++E+  ++ + k lG+g+Wk I++ + + Rt+ q+ s+ qky
   Neem_19599_f_1  93 KPWTEDEHRVFLAGLKSLGKGDWKGISKNFVTSRTPTQVASHAQKY 138
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.33487143IPR017930Myb domain
SuperFamilySSF466891.87E-1689143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-1091137IPR009057Homeodomain-like
SMARTSM007174.8E-1091141IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.1E-1792142IPR006447Myb domain, plants
PfamPF002495.3E-1093138IPR001005SANT/Myb domain
CDDcd001677.81E-994139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVKETIRKCS HCGHNGHNSR TCNGKGCIRL FGVNISGQIQ DHSIMTKSVS LDSLQSLAVA  60
DKLNAHVDDE GYLSDGPIHY KRHKAAHDRR KGKPWTEDEH RVFLAGLKSL GKGDWKGISK  120
NFVTSRTPTQ VASHAQKYFL RQASTDKKNR RTSLFDMPFK EPPALSPPQS PLLPPKTVAT  180
TSSQVNQTMN RFPNLGLDPV VPVAAIGGIP RPSYLGIPYM ERNVNMYINT KKPAGKSTES  240
GKILGKLLFY LFTQQRWTHE CVNRRLALSF SV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043898.13e-86probable transcription factor At5g61620
SwissprotQ9FKF91e-60M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1R3JIX82e-84A0A1R3JIX8_COCAP; Uncharacterized protein
STRINGEOY227625e-80(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-61MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]