PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19431_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 245aa    MW: 27661.4 Da    PI: 7.9269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19431_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-1274120354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs +++Lr++lP +      K +Ka+ L k+v+ +k+L
  Neem_19431_f_1  74 KNHKEAEKRRRERINSHLNKLRSILPCN-----SKIDKASLLAKVVQRVKEL 120
                     58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.12971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-1074120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-1174125No hitNo description
SuperFamilySSF474591.83E-1475133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-1475130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.4E-4159224No hitNo description
CDDcd048733.44E-4159226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQPENSELYG FLSQNGVGYH GFPFPAAGTT TYCEFSSMMQ QSFCSNSSSS YNYSLEVSGL  60
TETTPEDRAL AALKNHKEAE KRRRERINSH LNKLRSILPC NSKIDKASLL AKVVQRVKEL  120
KQQTHELTEQ ETFPSEIDEI SVLASNDYSS DGRLIFKASL CCEDRSDLLP DIVEILKSLH  180
LKTLKAEMVT VGGRIRNVLI VAAEKDHSIE SVHFLQNALK SLLERSNASD RSKRRRVLDH  240
KIMIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482067.11e-144transcription factor bHLH106
SwissprotO806743e-90BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2H5NU951e-142A0A2H5NU95_CITUN; Uncharacterized protein
STRINGXP_006482067.11e-143(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]