PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19055_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 226aa    MW: 25447.2 Da    PI: 5.4031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19055_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-1753102255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++ +g
  Neem_19055_f_1  53 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFLTAEMAARAHDVASLAVKG 102
                     69****998.**********843...6*******************99887666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3353116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3053111IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2053111IPR016177DNA-binding domain
PfamPF008478.4E-1153103IPR001471AP2/ERF domain
PROSITE profilePS5103221.9753110IPR001471AP2/ERF domain
PRINTSPR003672.3E-105465IPR001471AP2/ERF domain
CDDcd000186.04E-3054110No hitNo description
PRINTSPR003672.3E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDSAESQISN SFSTSKKKHS KQAKGLMSDT VDENEGKKMF KKLGSNNNLK HPTYRGVRMR  60
SWGKWVSEIR EPRKKSRIWL GTFLTAEMAA RAHDVASLAV KGHLAQLNFP QLADQLPRPA  120
SAAPKDIQAA AKAAAAAAIV DQSRRVETNS TESDGSLQNE SVDEESHSLI AEEINENNAW  180
FDNLPDLSPE EDSKYGFCYS SWWQQAGLFF DDIEVQQFEE RLCWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1744111573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490227.16e-69ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ73e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2H5QEA52e-68A0A2H5QEA5_CITUN; Uncharacterized protein
STRINGXP_006421614.17e-69(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]