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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_1898_f_1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
SRS |
| Protein Properties |
Length: 342aa MW: 37415.4 Da PI: 6.872 |
| Description |
SRS family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 231 | 2e-71 | 114 | 262 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99
g++sCqdCGnqakkdC h+RCRtCCksrgf+C+th+kstWvpa+krrerqqqla++++++++++ + + +++++++++ s+l++t++++++s
Neem_1898_f_1 114 GGMSCQDCGNQAKKDCPHMRCRTCCKSRGFECQTHIKSTWVPASKRRERQQQLASLQQQQQQQQLQLRGEQNKRQRENPGSSLACTRIPTNSS--G 207
789******************************************************999999966666666666789**********99875..5 PP
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+e+ ++P+evs++avfrcvrvss+dd+e+++aYqt+v+igGh+fkG+LydqG+e+
Neem_1898_f_1 208 FEVGNFPAEVSAQAVFRCVRVSSIDDAEDQYAYQTSVNIGGHLFKGLLYDQGIES 262
9999************************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MAGFFSLGAA GGRVSTNNNN NNQEDQQNNQ TNEITPDSWF WYKNEDLPYK GFELWQQQAE 60
LLLHQRQQQQ QQQDLYSSVA GFGMGPSRSS INVIGDNSSS RSAFMMVRST GVGGGMSCQD 120
CGNQAKKDCP HMRCRTCCKS RGFECQTHIK STWVPASKRR ERQQQLASLQ QQQQQQQLQL 180
RGEQNKRQRE NPGSSLACTR IPTNSSGFEV GNFPAEVSAQ AVFRCVRVSS IDDAEDQYAY 240
QTSVNIGGHL FKGLLYDQGI ESNYTTSEST PGGDGVQPLN LITAGPINTP PATIAATVSP 300
GDVVTAAPPA AFLDPSTLYP ITPFTTFMAP AGTQFFPSPR SS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G66350.1 | 5e-82 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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