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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Neem_187_f_3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family |
CO-like |
Protein Properties |
Length: 420aa MW: 46762.5 Da PI: 5.1126 |
Description |
CO-like family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 25.3 | 3.2e-08 | 16 | 58 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
+r C+ + +k+++++C ++ +lC+ C + H+ H++
Neem_187_f_3 16 ARACDGCLRKRARWYCAADDAFLCQGCDASVHSAnqlasrHER 58
578*****************************65777777776 PP
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2 | CCT | 68.2 | 2.2e-23 | 362 | 405 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Neem_187_f_3 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405
9*****************************************87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MISEKKAANA LGGKTARACD GCLRKRARWY CAADDAFLCQ GCDASVHSAN QLASRHERIR 60 LGVASSKLNG MVNDKETAPL WHQGFTRKAR TPRPNKAMLL QHAKDEEKVV NSNEPIVPEI 120 GSEEGSLDES TEEQLLYQVP VFDPFAAELG CDIIGSEGND QAAAGKGEEN MISDGYGQDG 180 TRDLDDLHGF LPSDMDLAEF AAEVESLLGG GAVDEDSCDV KDLGLLRCKE ENDHADVCFS 240 EQIAVKIKDE EVEGVAAIDW NFDYESPLIG EEEEKAVIQV ETTTMNTECK SEMKKNVSLK 300 LNYDAVITAW ASLGCPWTTG RRPEFNPNDC WPDCMVSCCK DVHHPYRGLL GCHMGGSSDG 360 GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFVET NNTFPNYLNK
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 372 | 388 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 4e-99 | B-box type zinc finger protein with CCT domain |