PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18633_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 441aa    MW: 49060.9 Da    PI: 9.0857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18633_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0591113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Neem_18633_f_1  91 FVCEICSKGFQRDQNLQLHRRGH 113
                     89*******************88 PP
2zf-C2H2130.00032167189123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Neem_18633_f_1 167 WKCDKCSKRYAVQSDWKAHSKTC 189
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.59E-790113No hitNo description
Gene3DG3DSA:3.30.160.605.1E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.88791113IPR007087Zinc finger, C2H2
SMARTSM003550.03691113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM00355210132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.59E-7162187No hitNo description
SMARTSM00355140167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMKGLIFQQQ QQQVLEENMS NLTSQSGTEA SVSSENIRAE TAANNFPHQQ QFFASPPQPP  60
PKKKRNLPGN PDPEAEVIAL SPKTLMATNR FVCEICSKGF QRDQNLQLHR RGHNLPWKLK  120
QRTNKEVRKK VYVCPEPSCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS  180
DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITGTN NPILGASSAA  240
AGNSSHISLQ IPQFSPQDFH AFSMKKEEQN FGLRQADHQI IPPWLSTQQP ILGAGPGPPS  300
SSSQTVDLSS SSSSIFNTRL DQFTHQNPNP NNLGPTIPPP HPFQQTTIAS PHMSATALLQ  360
KAAQMGATMS GNKTSNTTDT TRSHSRSDHL NQEINNGEEL TRDFLGLRAF SQTDILNIAA  420
FGNCINTEEQ QQNHSQKPWQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36163231371Zinc finger protein JACKDAW
5b3h_F2e-36163231371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117129KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-143AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036713.10.0protein indeterminate-domain 7
RefseqXP_024036715.10.0protein indeterminate-domain 7
RefseqXP_024036716.10.0protein indeterminate-domain 7
RefseqXP_024036717.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-135IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A067FD520.0A0A067FD52_CITSI; Uncharacterized protein
TrEMBLV4UKA40.0V4UKA4_9ROSI; Uncharacterized protein
STRINGXP_006426554.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-125indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]