PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18456_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 265aa    MW: 29335.5 Da    PI: 5.1225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18456_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+++ + +G+  +W + +r+ g++R++k+c++rw++yl
   Neem_18456_f_1 14 RGPWSPEEDTILKNYLQIHGTAsNWIALPRKAGLNRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.525966IPR017930Myb domain
SMARTSM007173.1E-111364IPR001005SANT/Myb domain
PfamPF002493.0E-141462IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-181591IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-231569IPR009057Homeodomain-like
CDDcd001671.06E-81662No hitNo description
PROSITE profilePS500904.63563107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-670105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCDRA SVKRGPWSPE EDTILKNYLQ IHGTASNWIA LPRKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIY TLYNSIGSRQ KKLLAGKVSL INRSNKNDKT TTHIVQGMIT  120
PSIPVSGNSD YRNSSYFTAN SGTLSSEDDI IYQQINLGPH EGIILDPNQV TFLGATGVSD  180
YHTSANSSYS SMSSSQEASS LSNSSSLTME SNYVSWSAKG DFEEQASLMD FGFDESPYEL  240
LLGFDFQKAS TEIDPDLGDY CPFRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898508.11e-72transcription factor MYB36-like
TrEMBLA0A1Q3B3093e-69A0A1Q3B309_CEPFO; Myb_DNA-binding domain-containing protein
STRINGVIT_11s0016g02780.t017e-66(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-49MYB family protein