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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_18290_f_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
SRS |
| Protein Properties |
Length: 228aa MW: 25439.5 Da PI: 8.6311 |
| Description |
SRS family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 180.4 | 7.5e-56 | 13 | 146 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98
g+a+CqdCGnqakk+C+++RCRtCCk rgf+C+th+kstW+pa++rr+r ++++ + ++ ++ + +++kr re+ +s++
Neem_18290_f_1 13 GGARCQDCGNQAKKNCVYMRCRTCCKRRGFECQTHIKSTWIPAYRRRQRYNHQQLLPAQ-GQQLQGHNPKRLREN----------------TSST 90
7889*********************************************8888776443.344444445555443................2233 PP
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++ ++P+e+s+ea frcvrvss++d+++++aYqtav+igGhvfkGiLydqG+e+
Neem_18290_f_1 91 GSQIGNFPAEMSTEATFRCVRVSSIEDADDNFAYQTAVTIGGHVFKGILYDQGPES 146
455788***********************************************985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MMLNMRQLGA ELGGARCQDC GNQAKKNCVY MRCRTCCKRR GFECQTHIKS TWIPAYRRRQ 60
RYNHQQLLPA QGQQLQGHNP KRLRENTSST GSQIGNFPAE MSTEATFRCV RVSSIEDADD 120
NFAYQTAVTI GGHVFKGILY DQGPESCYNV GESSSSEPPL PQPQPQPQQQ QPYYPFSVAN 180
LNTATTTTAT ATISNTSAAN ETLFPPPYTF PFTSFMSGGM QFFPHPKS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 2e-51 | Lateral root primordium (LRP) protein-related |
