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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17990_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 95aa MW: 10914.9 Da PI: 10.7386 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 6.9e-05 | 40 | 60 | 9 | 29 |
HHHHHHHHHHHHHHHHCTSCC CS HLH 9 ErrRRdriNsafeeLrellPk 29 r RR+ri +++ L++l+P Neem_17990_f_1 40 ARHRRERISEKIRILQRLVPG 60 699*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-4 | 36 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MKEMMYRIAA MQPVDIDPTT IRKPKRRNIR ISDDPQSVAA RHRRERISEK IRILQRLVPG 60 VTYGIKETSC EEGKKLVRIL LTKEGKGGII ITDEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker. {ECO:0000269|PubMed:15035986}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FUL, which restrict its expression to the margins. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504117.1 | 7e-36 | transcription factor HEC3-like | ||||
Refseq | XP_006464873.1 | 6e-36 | transcription factor HEC3 | ||||
Swissprot | O81313 | 3e-26 | IND_ARATH; Transcription factor IND | ||||
TrEMBL | A0A1S2YGP1 | 2e-34 | A0A1S2YGP1_CICAR; transcription factor HEC3-like | ||||
TrEMBL | A0A2H5Q1M5 | 1e-34 | A0A2H5Q1M5_CITUN; Uncharacterized protein | ||||
STRING | XP_006464873.1 | 2e-35 | (Citrus sinensis) | ||||
STRING | XP_004504117.1 | 3e-35 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4449 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 1e-28 | bHLH family protein |