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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17750_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28608.1 Da PI: 6.9488 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.2 | 4.8e-34 | 64 | 204 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Neem_17750_f_1 64 LPAGVKFDPTDNEIL-EHLEAKVLSDSrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdtdgs 154 799***********9.99****9999956644322..22222333336**********.555666777******************744345455 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +ge++g kk+Lv+y gr++k+ekt+Wvmh+y+l Neem_17750_f_1 155 ETRWHKTGKTRAVFV-GGEVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 204 778************.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-38 | 58 | 223 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.18 | 64 | 223 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-15 | 65 | 204 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MTWCNNSDDE EVAAAIRITT TSAEEQHCVT AAKTTQEIRT ITCPSCGHTI QFQDQTGIHD 60 MPGLPAGVKF DPTDNEILEH LEAKVLSDSR KLHPLIDEFI PTLEGENGIC YTHPEKLPGV 120 SKDGQIRHFF HRPSKAYTTG TRKRRKVHTD TDGSETRWHK TGKTRAVFVG GEVKGFKKIL 180 VLYTNYGRQR KPEKTNWVMH QYHLGNNEEE KDGELVVSKV FYQTQPRQCG SSSIKEDSLE 240 GNLIDRIAEW GIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811298.1 | 1e-148 | PREDICTED: NAC domain-containing protein 73-like | ||||
Refseq | XP_018811299.1 | 1e-148 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-123 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2N9G7P6 | 1e-149 | A0A2N9G7P6_FAGSY; Uncharacterized protein | ||||
STRING | XP_006467723.1 | 1e-146 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-125 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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