PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Neem_1766_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 290aa MW: 32698.2 Da PI: 10.9589

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1766_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ++F ++ L H++ H Neem_1766_f_3 42 YECQFCRRVFANSQALGGHQNAH 64 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.27E-6	39	69	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	40	68	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.718	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
Pfam	PF12023	2.3E-27	245	289	IPR021899	Protein of unknown function DUF3511

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAPDRKSDQK PTSALKLFGF PLTDQQDGIP GKREQRGENR KYECQFCRRV FANSQALGGH 60 QNAHKRERQR ARRPNFHGEQ QRFTAAAAPL MINSHAMRSA PSFHPREFTS NNNNIAAARF 120 VQRPGYYPSR PLLASLPRSE FPSQIYITQP VHVAPAMASQ AEFSVVDQLL IIQTNVLNEI 180 HFIIMDGYGS GQRSYGGDRR LEIVSGKSFS SGVGGNHMYA TPDLPQIPAR VSRTSNNASL 240 KPWGFGDPEM KRRKRIAQYK VYTVEGKVKA SLRKGLRWIK NKCSQIVHGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	3e-12	zinc-finger protein 1