PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17601_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 378aa    MW: 41877.2 Da    PI: 8.6523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17601_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.61.2e-40161412128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     ppG+rF Ptd elvv+yL +kv +++l+  + i+ +++y + P++L  ++ +++   +yfF++rd+ky++g+r+nr++ +gyWkatg dk v + 
  Neem_17601_f_1  16 PPGYRFCPTDIELVVYYLMNKVCNRPLPP-NKIRAINLYMYSPQELSDMCGSGDGgIMYFFTSRDRKYPNGNRPNRVAGNGYWKATGIDKVVGT- 108
                     9*************************999.77**************965556555266*******************************99999. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +g kk Lv+y+g++++++kt+W+m+eyr+
  Neem_17601_f_1 109 EENPIGYKKALVYYQGNHKDSKKTNWIMQEYRI 141
                     999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-509182IPR003441NAC domain
PROSITE profilePS5100545.66715182IPR003441NAC domain
PfamPF023652.1E-2216141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEEIDEATIA YLNSFPPGYR FCPTDIELVV YYLMNKVCNR PLPPNKIRAI NLYMYSPQEL  60
SDMCGSGDGG IMYFFTSRDR KYPNGNRPNR VAGNGYWKAT GIDKVVGTEE NPIGYKKALV  120
YYQGNHKDSK KTNWIMQEYR IDQKPPPRPA PDNKSFRSTA ASASAPPNMK LDDWVLCKVY  180
RKVNKSDKKK REGSSAPRVP QGSYNAEAST SSRVLHMPNN MGFMGYAPPL PAAGVAGWST  240
TTSSVRPPQY TAPIFGFSNS SRMPRPQYMA PNYNIGSPSS APPMPAALAG FSPSTSSVPR  300
PQYIEPNYNI DSTSSAPPMM MMQTTNYNSC SSNVVLQHQP LYSDYFPSSI AEEEVNSFLS  360
SLEDVCPSLD DEITGPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-441418816171NO APICAL MERISTEM PROTEIN
1ut4_B7e-441418816171NO APICAL MERISTEM PROTEIN
1ut7_A7e-441418816171NO APICAL MERISTEM PROTEIN
1ut7_B7e-441418816171NO APICAL MERISTEM PROTEIN
4dul_A7e-441418816171NAC domain-containing protein 19
4dul_B7e-441418816171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067ES304e-78A0A067ES30_CITSI; Uncharacterized protein
STRINGcassava4.1_029733m1e-54(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-48NAC domain containing protein 32