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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17126_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 30517.8 Da PI: 5.4145 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.2 | 3e-14 | 37 | 114 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk..kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 ++e y++ +++ +r ++++g W+atg+ k+++ + + +lvg k+ L+fy ++r++++ kt+W+mhey+l Neem_17126_f_1 37 KNERYYYYLKEN-------DSReVAHQGWWRATGHVKKIYINdeRCHLVGYKRPLTFYrfrdchcnRKRRQRAIKTNWIMHEYSL 114 344444444433.......33438899*************98555566**********888887776899999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.218 | 1 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-15 | 35 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-7 | 43 | 114 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAHTEGIWDK INIKDGNDDD ANWVQLYTGD YNVALSKNER YYYYLKENDS REVAHQGWWR 60 ATGHVKKIYI NDERCHLVGY KRPLTFYRFR DCHCNRKRRQ RAIKTNWIMH EYSLESFSTE 120 WRLCKIKYKG KTTAQEELEN IRKAGSRKQQ QQQQTLQLDN NIVYETCNNV AENIQMEATE 180 VEQQQTLQLD NNIVYETYNN VAENIQMEAM EVEQQQYPKA LYDPYDYSYY FDDNHQLDQA 240 AADLSEQIIP RLWS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043277.1 | 1e-53 | NAC domain-containing protein 72-like | ||||
STRING | XP_006495018.1 | 5e-53 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16224 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-10 | NAC domain containing protein 100 |