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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_16680_f_1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
TALE |
| Protein Properties |
Length: 330aa MW: 37608.6 Da PI: 6.8486 |
| Description |
TALE family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 23.3 | 1.1e-07 | 233 | 266 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
k +yp+++++++L +++gL+ +q+ +WF N+R +
Neem_16680_f_1 233 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 266
469*****************************87 PP
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| 2 | ELK | 25.3 | 3.5e-09 | 187 | 208 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK +L++++++++ ++++E++
Neem_16680_f_1 187 ELKIELKQGFKSRIEDVREEIL 208
9*******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010089 | Biological Process | xylem development |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MQEPSLGVMG SSGGEVSGEQ SRRLKAEIAT HPLYEQLLAA HVSCLRVATP IDQLPLIDAQ 60
LSQSHHILRS YASHHHSLAP HERQELDNFL AQYLIVLCTF KEQLQQHVRV HAVEAVMACR 120
EIENTLQALT GVPLGEGTGA TMSDDEDELQ MDFSIDQSGS DSHDLMGFGP LLPTESERSL 180
MERVRQELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT TTVLKNWWQQ HSKWPYPTED 240
DKAKLVEETG LQLKQINNWF INQRKRNWHS SSQSVTSLKS KRKRDQRIDE LTSNQLMSVN 300
VPIYTDLFGR LPGVYIYTFI ANFLSVKAVR
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 263 | 283 | RKRNWHSSSQSVTSLKSKRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC491443 | 7e-44 | KC491443.1 Salix x smithiana haplotype 2 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491444 | 7e-44 | KC491444.1 Salix x smithiana haplotype 3 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491446 | 7e-44 | KC491446.1 Salix x smithiana haplotype 5 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491447 | 7e-44 | KC491447.1 Salix x smithiana haplotype 7 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491448 | 7e-44 | KC491448.1 Salix caprea haplotype 3 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491449 | 7e-44 | KC491449.1 Salix viminalis haplotype 1 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491452 | 7e-44 | KC491452.1 Salix viminalis haplotype 4 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491453 | 7e-44 | KC491453.1 Salix cinerea haplotype 2 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491455 | 7e-44 | KC491455.1 Salix cinerea haplotype 5 putative lignin regulation (Knat7) gene, partial cds. |
| GenBank | KC491456 | 7e-44 | KC491456.1 Salix cinerea haplotype 7 putative lignin regulation (Knat7) gene, partial cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G62990.1 | 1e-159 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
| Publications
? help Back to Top |
- Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - He JB, et al.
KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
J Integr Plant Biol, 2018. 60(6): p. 514-528
[PMID:29393579]
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