PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_15288_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 254aa MW: 27408.5 Da PI: 5.3097 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd +lv +++++G+g+W++++ Neem_15288_f_1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNT 44 79************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.37E-9 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.392 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-4 | 13 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-9 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.20E-6 | 16 | 40 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGVDGVS TANSQQVSNS 60 KGQWERRLQT NIHMAKQALR EALSLDKTST VSLPLPTDQS TACPNSSSTT ITYASSAENI 120 SRLLQNWMKI PPKSTTTTAR TNSQASEGTI SATTALLQNW MKIPPKSTTT TARTNSQASE 180 GTISATTATA TTPEDLETSL FQDESKPMTN THQQVPLSLL EKWLFDDAAA AAATQTHEED 240 LINMSLVDTA AALF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229619 | 1e-34 | KP229619.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB63) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477451.1 | 4e-49 | myb-related protein 306-like | ||||
TrEMBL | A0A2Z6NMM7 | 1e-62 | A0A2Z6NMM7_TRISU; Uncharacterized protein | ||||
STRING | XP_006477451.1 | 1e-48 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 6e-33 | myb domain protein 60 |