PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_15185_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 167aa MW: 19230.5 Da PI: 10.4158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_15185_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	10	59	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ n+ E++ R ++++ + +L +l+P++ p Kls ei+ +A+ +I +Lq Neem_15185_f_1 10 RAQRNIKEKNPRMEMRDLLLKLASLIPPQ---P-SKLSGPEIVDQATGHIMQLQ 59 7789**********************6...3.8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-11	6	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.944	8	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-9	10	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	10	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MPRPMRSEWR AQRNIKEKNP RMEMRDLLLK LASLIPPQPS KLSGPEIVDQ ATGHIMQLQK 60 KNESLKRRRE LLRGDHPGSS RPRMLPIMNI TKLDSILEVN LICGLTNRNF MLHEIISVLE 120 DEGAEVIDAT QVTEGDRVIY FIKSKAIIPR IGFETSRAQE RLKELVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046481.1	1e-57	transcription factor bHLH167
TrEMBL	A0A2H5PEV9	1e-55	A0A2H5PEV9_CITUN; Uncharacterized protein
STRING	XP_006446341.1	3e-55	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	5e-33	bHLH family protein