PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_15159_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 452aa MW: 51939 Da PI: 6.5943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_15159_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.7	2.3e-21	121	218	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ t++++++ ++ d Neem_15159_f_1 121 KWTDNVVRLLIAVVACVGDDGIVDGveglkrksgimQKKGKWKTVSKIMISKGCQVSPQQCEDKFNDLNKRYKRLNDILGRGvTCQVVENPALMD 215 7************555555543223334445677******************************************99******999 PP trihelix 84 qle 86 +++ Neem_15159_f_1 216 SMT 218 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.8E-17	119	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MDSSGLGSRF LSNVGILDLE SSIPRHQQNQ LSHPSLTQQH QMNMLRGLEN DQHPIQPMEV 60 KSSSTKPFAM NLGKGRTVSP INAMNNGYTS EEDEPSFTED GNGENSNGSK DKKGSTWQRM 120 KWTDNVVRLL IAVVACVGDD GIVDGVEGLK RKSGIMQKKG KWKTVSKIMI SKGCQVSPQQ 180 CEDKFNDLNK RYKRLNDILG RGVTCQVVEN PALMDSMTQL SAKAKEDVRK ILSSKHLFYK 240 EMFAYHNGKK IPNCNDIDLQ GCSLPSGRCS KDNNESEEEE TERNDDTEED ESDNEDDRND 300 DRYGERMVEL GKGKRGSKED GHFGSQSTRL EGFETEMARI FQDPSKSSWE RREWIEKQKL 360 QLQDERVNIQ AQAFELEKQR LKWLRYCSKK DWELQRSRLE NERIRLDNER MILHLRQKEL 420 EVDVRRAEAS LEATFHGNRV QGRDHIDLGR HQ

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MDSSGLGSRF LSNVGILDLE SSIPRHQQNQ LSHPSLTQQH QMNMLRGLEN DQHPIQPMEV  60
KSSSTKPFAM NLGKGRTVSP INAMNNGYTS EEDEPSFTED GNGENSNGSK DKKGSTWQRM  120
KWTDNVVRLL IAVVACVGDD GIVDGVEGLK RKSGIMQKKG KWKTVSKIMI SKGCQVSPQQ  180
CEDKFNDLNK RYKRLNDILG RGVTCQVVEN PALMDSMTQL SAKAKEDVRK ILSSKHLFYK  240
EMFAYHNGKK IPNCNDIDLQ GCSLPSGRCS KDNNESEEEE TERNDDTEED ESDNEDDRND  300
DRYGERMVEL GKGKRGSKED GHFGSQSTRL EGFETEMARI FQDPSKSSWE RREWIEKQKL  360
QLQDERVNIQ AQAFELEKQR LKWLRYCSKK DWELQRSRLE NERIRLDNER MILHLRQKEL  420
EVDVRRAEAS LEATFHGNRV QGRDHIDLGR HQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006470589.1	0.0	uncharacterized protein LOC102621074 isoform X1
TrEMBL	A0A2H5P484	0.0	A0A2H5P484_CITUN; Uncharacterized protein
STRING	XP_006470589.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-83	sequence-specific DNA binding transcription factors