PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_14375_a_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 118aa MW: 13032 Da PI: 9.3551

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_14375_a_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.5e-05	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sFs+ L H++ H Neem_14375_a_1 4 HKCKLCTRSFSNGRALGGHMKAH 26 79******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.87E-5	3	29	No hit	No description
Pfam	PF13912	1.5E-7	3	28	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.679	4	31	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MERHKCKLCT RSFSNGRALG GHMKAHLAAL PLPPKTTQQQ LADTTTXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXSLAYGLR NNPKKSFRLA DPEFSFAVDS GSGSEAAAEF GNQEAKVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440308.1	7e-35	zinc finger protein ZAT1
TrEMBL	A0A067FDZ7	1e-33	A0A067FDZ7_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NTT7	2e-33	A0A2H5NTT7_CITUN; Uncharacterized protein
TrEMBL	V4T088	2e-33	V4T088_9ROSI; Uncharacterized protein
STRING	XP_006440308.1	3e-34	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9510	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16610.1	6e-15	C2H2-like zinc finger protein