PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14357_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 262aa    MW: 29084.7 Da    PI: 8.3357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14357_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-1265116155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i    ++++k+L+
  Neem_14357_f_2  65 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGSINFVKELE 116
                     79****************************...9****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.91E-1263120No hitNo description
PROSITE profilePS5088815.0464115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1664131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-965116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1365130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-970121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQHAKDWGHS SSSEACTGAT DQSLSGGVVF SSMEPAAAAA TTTTGGKRKR RRTKSSKNKE  60
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYVQRGD QASIIGGSIN FVKELEQLLQ  120
SMEAQKRNTP QHSDNGLSST FSDFFTFPQY STCATQNNNS FPGEKDSNTT ENVADIEVNM  180
AESHANIKIL TKKRPRQLLK MVASFQNLRL SILHLNVTTI DQTVLYSVSV KVEEGCQLNT  240
VDEIAAAVHQ ILLKIQEEAA FC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651KRKRRR
24751RKRRR
34752RKRRRT
46576RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472540.11e-130transcription factor bHLH96-like
SwissprotQ9C7T43e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLV4TC021e-127V4TC02_9ROSI; Uncharacterized protein
STRINGXP_006472540.11e-130(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]