PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14212_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 336aa    MW: 37768.9 Da    PI: 5.4381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14212_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13136187155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  Neem_14212_f_1 136 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 187
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-12134191No hitNo description
Gene3DG3DSA:4.10.280.102.6E-13134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16135200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALEAVVYQQ DFLGYNGSRD LYNLLGGNWG YVDDSLEKED DPFLDNQTET FLHGDNYWNN  60
NSSSSSPPSM VPSFNDFNYQ PNNSSSDNVT SNINNGSSTV LDDALPHIDT SSSCMPTRPK  120
RRRAKTRKNK EEIENQRMTH IAVERNRRKQ MNEYLSVLRS LMPDSYVQRG DQASIIGGAI  180
NFVKELEHRL QSLGAQKEVK EKSENGCPFA EFFTFPQYST SLTYSRSETN SIATKSETAV  240
SQETQSSVAD IEVNMVESHA NLKIRSKRRP KQLLKLVSGL HGMRLTILHL NVTTADEIVL  300
YSLSVKVEDD CKLTSGDDIA TAVYHLLGRI QEDASC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136147RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-33LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-33LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471948.11e-150transcription factor bHLH96
TrEMBLA0A2H5PA081e-149A0A2H5PA08_CITUN; Uncharacterized protein
STRINGXP_006471948.11e-149(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-77bHLH family protein