PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1417_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family BBR-BPC
Protein Properties Length: 314aa    MW: 35198.9 Da    PI: 9.9769
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1417_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind335.31.5e-10213141301
      GAGA_bind   1 mdddgsre.rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 
                    md+  +++ r k  yy+                p+++l   +++++m++++er+ +irern+alsek++a+a+rd a+ +rdkalaer++al+ rd
  Neem_1417_f_1   1 MDEGQHENgRYKLdYYKgahaqwnmipqhqikePNNALV--MNKKIMAILEEREVAIRERNIALSEKREALAARDQALEERDKALAERDDALMARD 94 
                    888888888988889999999999998887754446666..99***************************************************** PP

      GAGA_bind  79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
                    n+l+al+++e++   + p++ +  +g k +++    +  ++++     + ++ ++a+pi+   +e+ +++  k+++++k    + + +++k +++s
  Neem_1417_f_1  95 NALAALQYRETA--VNYPSSGGFQRGGKRMHHPTY-HSGDVAEALNSGNMRQVTDATPISVISSESPRSHPAKRTKENKAVIPRPSVSPRKMKKVS 187
                    ********9998..6678899999*******8887.666777766666667778888988877777777666666555555544444555544444 PP

      GAGA_bind 175 kkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
                    ++ +kk+ +d ++ k+e++++d +ln v++De+t+PvPvCsCtG++rqCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f+klL
  Neem_1417_f_1 188 EDLNKKAASDgKKIKSEWDNQD-GLNLVNFDETTMPVPVCSCTGTPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLL 282
                    4444444444489*********.9************************************************************************ PP

      GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                    +++aaeG+dls p+DLk++WA+HGtn+++ti+
  Neem_1417_f_1 283 SRVAAEGHDLSVPLDLKNFWARHGTNRYITIK 314
                    *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.8E-1511314IPR010409GAGA-binding transcriptional activator
PfamPF062174.7E-941314IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDEGQHENGR YKLDYYKGAH AQWNMIPQHQ IKEPNNALVM NKKIMAILEE REVAIRERNI  60
ALSEKREALA ARDQALEERD KALAERDDAL MARDNALAAL QYRETAVNYP SSGGFQRGGK  120
RMHHPTYHSG DVAEALNSGN MRQVTDATPI SVISSESPRS HPAKRTKENK AVIPRPSVSP  180
RKMKKVSEDL NKKAASDGKK IKSEWDNQDG LNLVNFDETT MPVPVCSCTG TPRQCYKWGN  240
GGWQSSCCTT TLSSYPLPQM PNKRHARVGG RKMSGSVFTK LLSRVAAEGH DLSVPLDLKN  300
FWARHGTNRY ITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487267.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-132BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A067DHJ20.0A0A067DHJ2_CITSI; Uncharacterized protein
STRINGXP_006487267.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-135basic pentacysteine 4