PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_13954_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | TCP | ||||||||
Protein Properties | Length: 239aa MW: 25513.6 Da PI: 5.6254 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89.4 | 7.8e-28 | 1 | 95 | 24 | 89 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............................k 89 ++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+s+ s + + Neem_13954_f_1 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSsLNVSLRSSGSS-SLSlsssksaplsfhgalplysnnnggfgvafH 95 9**********************************************888755555555552.222223334455555565565555555544331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.241 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-26 | 1 | 103 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSIIAAT GTGTIPANFS SLNVSLRSSG 60 SSSLSLSSSK SAPLSFHGAL PLYSNNNGGF GVAFHHNHHQ FYHQHQPNSG DHHHYFFRED 120 LFKESSDHQR NAPETASVAT VIAANAGPNA FWMLPAGGSG GAGSDPQMWS TFPAAQNYSL 180 GSLFANQQQI GGQQSNNIGV TAAYSNSNSG RAAELAMNLE QDHQENNQVS DSGEEDSQE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022719790.1 | 8e-63 | transcription factor TCP23-like | ||||
TrEMBL | A0A061FIV6 | 2e-59 | A0A061FIV6_THECC; TCP family transcription factor, putative | ||||
STRING | EOY17245 | 4e-60 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7053 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-27 | TCP family protein |