PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13873_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 303aa    MW: 35044.2 Da    PI: 8.3661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13873_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.81e-2341513128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk................kvka.....eekewyfFskrdkkyatgkrk 74 
                     +G+rF+Pt++elv+++L +k+++++ l+ ++ +k +d+y   ePw + +                   +     +++ +yfF++ +k +++g+r 
  Neem_13873_f_2   4 VGYRFRPTEQELVNYFLYNKITQNPvLDDHDGVKMCDLYGDqEPWGIWNvyqdytkpepwgiwnvY--GgndllKDEALYFFTQLKKLTPNGSRY 96 
                     7************************65555668888888644888885345677777777776541..23445567788**************** PP

             NAM  75 nratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     nr ++sg+W+     k+v++   +++ +g kk + + +g++++ ++ +W+m ey++
  Neem_13873_f_2  97 NRRIASGVWQGEDGAKAVMAYggSKQIIGFKKRFRYEDGNNSE-QNGRWIMYEYTI 151
                     **********999999**998666777*********9998888.89********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.2942175IPR003441NAC domain
SuperFamilySSF1019412.75E-244173IPR003441NAC domain
PfamPF023651.3E-184151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPKVGYRFRP TEQELVNYFL YNKITQNPVL DDHDGVKMCD LYGDQEPWGI WNVYQDYTKP  60
EPWGIWNVYG GNDLLKDEAL YFFTQLKKLT PNGSRYNRRI ASGVWQGEDG AKAVMAYGGS  120
KQIIGFKKRF RYEDGNNSEQ NGRWIMYEYT INSSFLGEQY SHKATDYVVC SMKKNEKGQQ  180
KEETDLGKKK SKSKQIGKKN GSGEGATGRK RKLKQTATSN NNDHHGDQGV QNKRLKSEQE  240
APRIEQNQLV ELPCANSVLQ VLHSEETDSN FEFSGRPIGD LLDFITFDVE DLAYWRLVRL  300
YYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214GRKRKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015382069.16e-79NAC domain-containing protein 53-like
STRINGXP_006492969.19e-78(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1918526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-14NAC-domain protein 101