PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13815_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 338aa    MW: 37487.6 Da    PI: 4.4
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13815_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-081443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +grWT+eEde+l ++++  G g+W++ ++ 
   Neem_13815_f_1 14 KGRWTAEEDEILTKYIQANGEGSWRSLPKN 43
                     79***********************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-11544IPR009057Homeodomain-like
SuperFamilySSF466897.8E-7843IPR009057Homeodomain-like
PROSITE profilePS500907.201948IPR017877Myb-like domain
PfamPF002498.1E-61443IPR001005SANT/Myb domain
CDDcd001670.002581646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRAPCCDKV GLKKGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAAGETTL PMAVDVANAG  60
VTIKRKGGRT SRWAMKKNKS YAQKYATVSA KRSKENVSIN EIKPSTAKTT PEKETLSSSA  120
IKGSMDLDPF AEDKEITYVV APSPCEKTAA PKRLASIEER ETLVDFPKEG KTMGNSMLCP  180
SGEEKETEIL GPFEGIDGGM LCFNYDIMDD GPLDPNGGLT LMEERENCFT NFTKERESEK  240
LSTNNTSKNE EVESVNQSTT GENGDLHSCS SITSYFDDSS FDWDWESVIQ GHNDQQCYEK  300
DNTLSLLWES DNIDEINNLK TEDIDSEKQN AMVAWLLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051069.12e-65PREDICTED: transcription factor MYB12
TrEMBLA0A061DT345e-64A0A061DT34_THECC; MYB-like DNA-binding domain protein
STRINGEOX952268e-65(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2279534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-22myb domain protein 111