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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1375_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 24493.5 Da PI: 5.598 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.4 | 6.2e-28 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p GfrF+Ptd+el+ e L +kv+g+++++ + i ++d+y+++P +++ ++++ +++e ++++ +++ + + + g W+atg+ k+++ Neem_1375_f_2 9 MPTGFRFNPTDDELI-ELLDRKVSGQDMHFYGHfILQTDVYNLDPDNFQwdQNLALSNNERFYYCVKENDS------REVSGCGWWRATGHVKKIY 97 699************.99*********9998877**************8644666788999****998753......347789************* PP NAM 94 sk..kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 ++ ++ lvg kk L+f+ + r++++ kt+W+mheyr+ Neem_1375_f_2 98 VNynNQVLVGFKKPLTFHkfrdyqdvETRRRNTIKTNWIMHEYRI 142 99767777**********777777766899999**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-31 | 2 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.686 | 9 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-17 | 10 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLMMEMLMMP TGFRFNPTDD ELIELLDRKV SGQDMHFYGH FILQTDVYNL DPDNFQWDQN 60 LALSNNERFY YCVKENDSRE VSGCGWWRAT GHVKKIYVNY NNQVLVGFKK PLTFHKFRDY 120 QDVETRRRNT IKTNWIMHEY RIESYSTEWR LCRLKHKGKR SVQEEMEADF SYPCYDHFED 180 DQLQQYADSP EQLFPSIWSW Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-16 | 4 | 164 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-16 | 4 | 164 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-16 | 4 | 164 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-16 | 4 | 164 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-16 | 4 | 164 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-16 | 4 | 164 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-16 | 4 | 164 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024950105.1 | 4e-81 | NAC domain-containing protein 83-like | ||||
TrEMBL | B9HH64 | 4e-65 | B9HH64_POPTR; Uncharacterized protein | ||||
STRING | XP_006495018.1 | 2e-78 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16224 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 5e-21 | NAC domain containing protein 58 |