PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13553_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 349aa MW: 39201.3 Da PI: 9.4598

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13553_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71	2.1e-22	39	130	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+ + +++k+ s+ ss++++f++++a Neem_13553_f_2 39 CWSHDETVALIDAYRDKWYALRRGNLKATHWQEVADAVgrrcPAASPPKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFSSSWVHFKRMDA 130 8*********************************9977666777799*********************9779**********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-22	38	131	No hit	No description
SMART	SM00595	4.1E-14	47	136	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MSSPTPQDPT SQETSTPLPL PAPPLQPPPV NPRRLPPPCW SHDETVALID AYRDKWYALR 60 RGNLKATHWQ EVADAVGRRC PAASPPKTAV QCRHKMEKLR KRYRTEIQRA KSMPLSRFSS 120 SWVHFKRMDA MEKGPSVKPD YNSDSQDEDD NDEEDDEDLN QDMYQERSNF KNGVVNTRSV 180 HNLYRNGVNT GPGSGGSSGF RIRIPTGVSI AQPAPKIYAK MGTNLNPNAN LNSNFNQKPN 240 FGSPASASGS GLNYGTRVLR GCEDTATGKR EREPVVAEMV AAIKMLGDGF VRMEQMKMEM 300 AREIETMRME MEMKRTEMIL ESQQRIVEAF AKAVSEKSKK AKRMPEPES

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MSSPTPQDPT SQETSTPLPL PAPPLQPPPV NPRRLPPPCW SHDETVALID AYRDKWYALR  60
RGNLKATHWQ EVADAVGRRC PAASPPKTAV QCRHKMEKLR KRYRTEIQRA KSMPLSRFSS  120
SWVHFKRMDA MEKGPSVKPD YNSDSQDEDD NDEEDDEDLN QDMYQERSNF KNGVVNTRSV  180
HNLYRNGVNT GPGSGGSSGF RIRIPTGVSI AQPAPKIYAK MGTNLNPNAN LNSNFNQKPN  240
FGSPASASGS GLNYGTRVLR GCEDTATGKR EREPVVAEMV AAIKMLGDGF VRMEQMKMEM  300
AREIETMRME MEMKRTEMIL ESQQRIVEAF AKAVSEKSKK AKRMPEPES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445449.1	1e-175	trihelix transcription factor ASIL2
Refseq	XP_006464404.1	1e-175	trihelix transcription factor ASIL2
TrEMBL	A0A067HCG4	1e-174	A0A067HCG4_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PZN2	1e-174	A0A2H5PZN2_CITUN; Uncharacterized protein
TrEMBL	V4VYX8	1e-174	V4VYX8_9ROSI; Uncharacterized protein
STRING	XP_006464404.1	1e-175	(Citrus sinensis)
STRING	XP_006445449.1	1e-175	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-67	Trihelix family protein