PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13363_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 260aa MW: 29919.8 Da PI: 6.1651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13363_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d++k +G g W+ +++ g++R++k+c++rw++yl Neem_13363_f_1 14 RGAWTAAEDKILIDYIKIHGEGKWRNLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.225	9	65	IPR017930	Myb domain
SMART	SM00717	6.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.04E-21	15	88	IPR009057	Homeodomain-like
CDD	cd00167	5.49E-11	16	61	No hit	No description
PROSITE profile	PS50090	4.414	62	116	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.1E-6	65	87	IPR009057	Homeodomain-like
SMART	SM00717	62	66	130	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGRSPCCAKE GLNRGAWTAA EDKILIDYIK IHGEGKWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHRLLGNSRK PSFQCRENPK FVVEKLVSQP GKTGRESYPI 120 RTKATKCTKV FMTNPDPQKF EQVVQTEQMM MATSMANRSD DQNVNKETSE SLPEFNLEEN 180 GPSDFMIDFE MDEHFLSFLN TDFSQLPNFA DTSGGGDRRS TSNTSSEEIN LLISEEKQQL 240 REMDFPTMDS IMGSEFEWFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-12	12	87	25	99	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275148.1	6e-78	PREDICTED: myb-related protein Zm38
TrEMBL	A5AXZ4	7e-80	A5AXZ4_VITVI; Uncharacterized protein
STRING	VIT_09s0002g01400.t01	1e-75	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-36	myb domain protein 7