PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13355_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SAP

Protein Properties

Length: 391aa MW: 44546.4 Da PI: 7.3293

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13355_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	634.2	2.4e-193	18	388	78	453
SAP 78 qvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGav 172 vcstwravsrsdllw+rltrriW rt+l++ tWr+ey+yrhrta+nfrtrry++v l+fdp+dvd+ +d l+Crcl+lsd +la+GfadG+v Neem_13355_f_3 18 YVCSTWRAVSRSDLLWHRLTRRIWGRTNLMHPTWRDEYVYRHRTAQNFRTRRYTHVILHFDPSDVDN---PDGLTCRCLSLSDLHLACGFADGTV 109 59***********************************************************9988...689****************** PP SAP 173 rlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGr 267 rlfdl+tr+hv+tf+pqhrdrlGrfsravsGi+++ds++vfatldGdihvavid + +arra+lG+vvndG+lvdf+G++r+wvGl+aG +Gr Neem_13355_f_3 110 RLFDLATRTHVRTFRPQHRDRLGRFSRAVSGIILTDSQVVFATLDGDIHVAVIDD-VENQARRAHLGNVVNDGVLVDFTGCERYWVGLFAGLAGR 203 **************************************************9.6699******************************* PP SAP 268 afhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvds 362 afh+Wd++teel+fvGGsltd ++vmGW mlte+te+vGrvrvt++e+avaCts+r+++fdlrnqgv+l+e+e rrG++v+s+d++neay+vvds Neem_13355_f_3 204 AFHMWDGQTEELTFVGGSLTDQNTVMGWRMLTEFTEFVGRVRVTSQESAVACTSSRVIIFDLRNQGVILGEREYRRGIMVTSVDVNNEAYIVVDS 298 ******************************************************************************************* PP SAP 363 rGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfg 453 rG a+vrrv+++eevcrf+ r +++v+gC+n+g al++aggv+rvWe+e+ e y+y +rer+gevna+v ddrhva+s s+g+ihl+dfg Neem_13355_f_3 299 RGLAIVRRVDTFEEVCRFNTRVrRNGNVMGCMNQGCALMCAGGVIRVWEVEQGE-YMYRIRERIGEVNAFVGDDRHVAAS-SEGSIHLWDFG 388 ***************99888999*********************77.******************986.689*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	6.76E-7	19	60	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	4.9E-6	19	78	No hit	No description
Gene3D	G3DSA:2.130.10.10	4.2E-15	84	387	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	5.8E-16	85	184	IPR017986	WD40-repeat-containing domain
SuperFamily	SSF50978	5.8E-16	230	388	IPR017986	WD40-repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009908	Biological Process	flower development
GO:0030163	Biological Process	protein catabolic process
GO:0046622	Biological Process	positive regulation of organ growth
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MAINQDINDN ENKALKLYVC STWRAVSRSD LLWHRLTRRI WGRTNLMHPT WRDEYVYRHR 60 TAQNFRTRRY THVILHFDPS DVDNPDGLTC RCLSLSDLHL ACGFADGTVR LFDLATRTHV 120 RTFRPQHRDR LGRFSRAVSG IILTDSQVVF ATLDGDIHVA VIDDVENQAR RAHLGNVVND 180 GVLVDFTGCE RYWVGLFAGL AGRAFHMWDG QTEELTFVGG SLTDQNTVMG WRMLTEFTEF 240 VGRVRVTSQE SAVACTSSRV IIFDLRNQGV ILGEREYRRG IMVTSVDVNN EAYIVVDSRG 300 LAIVRRVDTF EEVCRFNTRV RRNGNVMGCM NQGCALMCAG GVIRVWEVEQ GEYMYRIRER 360 IGEVNAFVGD DRHVAASSEG SIHLWDFGGA Q

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MAINQDINDN ENKALKLYVC STWRAVSRSD LLWHRLTRRI WGRTNLMHPT WRDEYVYRHR  60
TAQNFRTRRY THVILHFDPS DVDNPDGLTC RCLSLSDLHL ACGFADGTVR LFDLATRTHV  120
RTFRPQHRDR LGRFSRAVSG IILTDSQVVF ATLDGDIHVA VIDDVENQAR RAHLGNVVND  180
GVLVDFTGCE RYWVGLFAGL AGRAFHMWDG QTEELTFVGG SLTDQNTVMG WRMLTEFTEF  240
VGRVRVTSQE SAVACTSSRV IIFDLRNQGV ILGEREYRRG IMVTSVDVNN EAYIVVDSRG  300
LAIVRRVDTF EEVCRFNTRV RRNGNVMGCM NQGCALMCAG GVIRVWEVEQ GEYMYRIRER  360
IGEVNAFVGD DRHVAASSEG SIHLWDFGGA Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447777.1	0.0	transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	1e-173	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A067F5C1	0.0	A0A067F5C1_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006469483.1	0.0	(Citrus sinensis)
STRING	XP_006447777.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11018	26	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	1e-175	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]