PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12916_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 308aa    MW: 35014 Da    PI: 6.4365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12916_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002186208123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  Neem_12916_f_1 186 YKCETCKKVFKSYQALGGHRASH 208
                     9************9999998887 PP
2zf-C2H212.50.00046232254123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H rtH
  Neem_12916_f_1 232 HECPVCFRVFSSGQALGGHKRTH 254
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-11186210IPR007087Zinc finger, C2H2
SMARTSM003550.023186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034186213IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-7186254No hitNo description
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
PfamPF139123.2E-11231254IPR007087Zinc finger, C2H2
SMARTSM003550.15232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452232254IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKHKSSSPS SSSSPSEDEE GEGKSLFYGL RENPKRSIRL VDPEFSFAVD AGSVVLQDRE  60
SETESSKNPT RRRSKRTRKF EHQYQQQQQE TMKKLKFSKL SKTESWVEPE PMSSISDTTT  120
EEDVAFCLMM LSRDKWKRKE NQNELLLLQE EEEEAAAVAV ATEKSMEETD ESEEFKSFKN  180
RSRGKYKCET CKKVFKSYQA LGGHRASHKK IKFYTPSHET ELEQENADKK VHECPVCFRV  240
FSSGQALGGH KRTHVTGLVA SSTSARSSTK LGENLIDLNL PAPIDDDDIS QIELSAVSDA  300
EFVNHIKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17095RRRSKRTRKFEHQYQQQQQETMKKLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9477123e-77KU947712.1 Toxicodendron vernicifluum microsatellite c24822 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620585.11e-145zinc finger protein ZAT9-like
SwissprotQ9M2022e-56ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A2C9WPI61e-143A0A2C9WPI6_MANES; Uncharacterized protein
STRINGcassava4.1_031439m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-57C2H2-like zinc finger protein