PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12411_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 283aa    MW: 32867.8 Da    PI: 9.3978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12411_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.55.3e-3649834128
             NAM  34 ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     ik v++y+++P++L  ++ + +ekewyfF++rd+ky++g+r+nra+++gyWkatg dk+v+  +++ vg kk+Lvfykg+apkg+kt+W+mheyr
  Neem_12411_f_3   4 IKVVELYRFNPKKLAeSCRSLGEKEWYFFTPRDRKYPNGQRPNRAATDGYWKATGADKPVKY-NDNIVGFKKSLVFYKGKAPKGSKTNWIMHEYR 97 
                     8899**********8445555999********************999***************.999****************************9 PP

             NAM 128 l 128
                     +
  Neem_12411_f_3  98 A 98 
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.2551124IPR003441NAC domain
SuperFamilySSF1019416.15E-423124IPR003441NAC domain
PfamPF023651.6E-151597IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
PNRIKVVELY RFNPKKLAES CRSLGEKEWY FFTPRDRKYP NGQRPNRAAT DGYWKATGAD  60
KPVKYNDNIV GFKKSLVFYK GKAPKGSKTN WIMHEYRANN PPKMSNNRND MRLDDWVLCR  120
IQQKNRSSTR KRDSSVQEQQ IEIESETQGS AQTSVKGPKM QHTEVLKPEG LGIIDMSYYY  180
NQGKLFNESD DILSPYLNFP HSQVSQDLLP TFLQSYHHPL GLNHLFHQNP SSLVEESSSP  240
RLKLQPTDSR MKPEQVGYHP DDYLNIPSED NFYDPLSHSF ANF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-45413049171NO APICAL MERISTEM PROTEIN
1ut4_B3e-45413049171NO APICAL MERISTEM PROTEIN
1ut7_A3e-45413049171NO APICAL MERISTEM PROTEIN
1ut7_B3e-45413049171NO APICAL MERISTEM PROTEIN
4dul_A3e-45413049171NAC domain-containing protein 19
4dul_B3e-45413049171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453418.11e-101protein ATAF2
RefseqXP_024953201.11e-101protein ATAF2-like
TrEMBLV4U1I41e-100V4U1I4_9ROSI; Uncharacterized protein
STRINGXP_006474626.11e-101(Citrus sinensis)
STRINGXP_006453418.11e-101(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17542310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-49NAC family protein